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DNA binding site
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91	letters to nature breaks induced at ectopic transcription units 21 activated by demethylation. The data presented here show that Dnmt3L is required for heritable silencing of retrotransposons in male germ cells. Temporar Add to Reading List Source URL: www.psrg.lcs.mit.edu Language: English - Date: 2004-11-23 11:46:05 Molecular biology Molecular genetics Transcription factors Promoter Phylogenetic footprinting DNA methylation Ridge DNA binding site Regulation of gene expression Biology Gene expression DNA
92	A n a ly s i s Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape Add to Reading List Source URL: www.psrg.lcs.mit.edu Language: English - Date: 2014-05-21 15:52:05 Molecular genetics DNA Protein methods Chip-sequencing DNA binding site Chromatin immunoprecipitation Hypersensitive site DNase-Seq Chromatin Biology Transcription factors Gene expression
93	PPARgamma in adipocyte differentiation - a ChIP-Seq case study Example analysis using Genomatix technologies to study a ChIP-Seq data on PPARgamma. Intention and extent This case study shows an example of an analysis wor Add to Reading List Source URL: www.genomatix.de Language: English - Date: 2012-06-01 08:48:12 Protein methods DNA Bioinformatics Transcription factors Chip-sequencing Genomatix Chromatin immunoprecipitation DNA binding site Promoter Biology Biochemistry Gene expression
94	BIOINFORMATICS ORIGINAL PAPER Vol. 22 no[removed], pages 423–429 doi:[removed]bioinformatics/bti815 Add to Reading List Source URL: www.psrg.lcs.mit.edu Language: English - Date: 2010-05-19 16:57:42 DNA Gene expression Molecular genetics Molecular biology DNA binding site Sequence motif TRANSFAC Transcription factor DNA-binding domain Biology Biochemistry Bioinformatics
95	brief communications © 2011 Nature America, Inc. All rights reserved. Embryonic stem cell–based mapping of developmental Add to Reading List Source URL: www.psrg.lcs.mit.edu Language: English - Date: 2012-03-01 16:31:46 Transcription factors Protein methods Gene expression DNA Chip-sequencing DNA binding site Chromatin immunoprecipitation Immunoprecipitation Hox gene Biology Biochemistry Molecular biology
96	BIOINFORMATICS ORIGINAL PAPER Genome analysis Add to Reading List Source URL: www.psrg.lcs.mit.edu Language: English - Date: 2012-03-01 15:47:27 Molecular biology Gene expression Bioinformatics Transcription factors Chip-sequencing ChIP-on-chip CTCF DNA binding site Chromatin immunoprecipitation Biology Biochemistry Protein methods
97	Chapter 6 Prediction and Integration of Regulatory and Protein–Protein Interactions Duangdao Wichadakul, Jason McDermott, and Ram Samudrala Abstract Knowledge of transcriptional regulatory interactions (TRIs) is essent Add to Reading List Source URL: www.ram.org Language: English - Date: 2010-03-22 03:52:32 DNA Bioinformatics Proteins WormBase Functional genomics Promoter DNA binding site TRANSFAC Transcription factor Biology Gene expression Molecular biology
98	High-resolution computational models of genome binding events Yuan Qi1∗ , Alex Rolfe1∗ , Kenzie D. MacIsaac1∗ , Georg K. Gerber1,2 , Dmitry Pokholok3 , Julia Zeitlinger3 , Timothy Danford1 , Robin D. Dowell1 , Erne Add to Reading List Source URL: www.psrg.lcs.mit.edu Language: English - Date: 2006-09-30 22:01:24 DNA Gene expression Protein methods Microarrays DNA binding site ChIP-on-chip DNA microarray Chromatin immunoprecipitation Regulation of gene expression Biology Biochemistry Bioinformatics
99	© 2007 Nature Publishing Group http://www.nature.com/naturegenetics B R I E F C O M M U N I C AT I O N S Tissue-specific transcriptional regulation has diverged Add to Reading List Source URL: www.psrg.lcs.mit.edu Language: English - Date: 2008-02-18 13:14:07 DNA Molecular genetics Proteins HNF1A Promoter DNA binding site Hepatocyte nuclear factor 4 Ridge Phylogenetic footprinting Biology Transcription factors Gene expression
100	High Resolution Genome Wide Binding Event Finding and Motif Discovery Reveals Transcription Factor Spatial Binding Constraints Yuchun Guo1,2, Shaun Mahony2, David K. Gifford2 1 Computational and Systems Biology Program Add to Reading List Source URL: www.psrg.lcs.mit.edu Language: English - Date: 2013-04-10 11:39:36 Transcription factors Molecular biology Protein methods Bioinformatics DNA binding site Chip-sequencing CTCF Sequence motif Chromatin immunoprecipitation Biology Biochemistry Gene expression

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